Basic Information
VIS ID
TVIS20003369
Fusion event
HPV-LOC105374090 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
126318996/126600153 (Hg38)
End
126318996/126600153 (Hg38)
Location type
Intronic
Target gene
LOC105374090
Nearest miRNA
hsa-let-7g/Upstream/809601; hsa-mir-12124/Downstream/975113;
Nearest TSS
ENST00000440867/Upstream/27517; ENST00000514908/Downstream/8402;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/57640, chr3-CpG: 88/Downstream/54532
Upstream sequence
tttgagtcttcaccagccacatgtgatgatggctgccacccttgttctagaaagcccagaatagcctctgcttcttctcatttgCATTGCTTTTTCCCCC
Downstream sequence
cctgccacaatagtcatcatcaagatgtcctgcttgctggccaACTATTGCGACCACATcagagggacaggatggatctgcagcccaactgtgattcagt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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