Basic Information
VIS ID
TVIS20003386
Fusion event
HPV-chr1:q24.1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV58
Reference genome
HQ537777.1
Host Sequence
Chromosome
chr1
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
166460357/166491120 (Hg38)
End
166460357/166491120 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/336322; hsa-mir-1182/Downstream/1507540;
Nearest TSS
ENST00000473358/Upstream/1081; ENST00000449930/Downstream/348327;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/323909, chr1-CpG: 112/Downstream/347984
Nearby gene
FMO7P(-1081) ;
Upstream sequence
cgttcctctgactgatcctcactggtcacctatgttacatatacttacccttccctaattgctttgtacactgttgtgttcactattgagtgatgtcttt
Downstream sequence
gttttagccttttttgcatattcacaaaccaatcagcacatactcacctattctgaacccataacagccccagactcagccacactgggggagaaaccac
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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