Basic Information
VIS ID
TVIS20003392
Fusion event
HPV-CCDC88B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV58
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
End
64119232/64351760 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-129-2/Upstream/9856; hsa-let-7a-2/Downstream/16842;
Upstream sequence
CCACCAacacatgcacacacacgcacactgcacacacagtacacacacacacacaccacatatacacaccatactcacgccacacacacaccacacacca
Downstream sequence
cacacatacacaccacacacaccacacacataccacacacacaccatacaaactacacacaccacacaatacgtgcacacacacgccacacaaacccacc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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