Basic Information
VIS ID
TVIS20003407
Fusion event
HPV-LINC01837 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV58
Reference genome
HQ537777.1
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
32332191/31841285 (Hg38)
End
32332191/31841285 (Hg38)
Location type
Intronic
Target gene
LINC01837
Nearest miRNA
hsa-mir-10395/Upstream/11441931; hsa-let-7e/Downstream/3281415;
Nearest TSS
ENST00000633603/Upstream/245565; ENST00000593056/Downstream/66999;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/483982, chr19-CpG: 27/Downstream/383193
Upstream sequence
ttcacaagatactctaccctaacttgaatgttccactccactgctagaattatctaattttatgaacagtcttgcttccttttattaaagaatagtgctt
Downstream sequence
tcctgaattacttcacttagaataatggcctccagctcaatctaagttgctataaaatacattatttagttcctctttatggctgagtaatattccatgg
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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