Basic Information
VIS ID
TVIS20003436
Fusion event
HPV-AP1S3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr2
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
224633710/223768993 (Hg38)
End
224633710/223768993 (Hg38)
Location type
Intronic
Target gene
AP1S3
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-101-3p ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-4257 ; hsa-mir-6500-3p ; hsa-mir-4705 ; hsa-mir-3614-5p ; hsa-mir-1295b-5p ; hsa-mir-1912 ; hsa-mir-34b-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-498 ; hsa-mir-183-5p ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-1282 ; hsa-mir-5707 ; hsa-mir-6746-5p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10b/Upstream/3862428; hsa-mir-1244-1/Downstream/1241468;
Nearest TSS
ENST00000437798/Upstream/166490; ENST00000258383/Downstream/68491;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/715674, chr2-CpG: 79/Downstream/68228
Upstream sequence
GTTCCCTCTACTCATTCATCCAACAGGAAacagagcctctcaggagcagtaccatttaatccttcaccacctgagaggagatgagagctgttattcccat
Downstream sequence
ATACTTACAAGTTAGGTCAATAAACTAGCAAACTTCACAAGGAACATGGTTTAAGTCAACAGATCCAAATGAATCCAacttccatacagaattaccatgg
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate