Basic Information
VIS ID
TVIS20003457
Fusion event
HPV-LOC105373628 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
134758177/134000606 (Hg38)
End
134758177/134000606 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373628
Nearest miRNA
hsa-mir-1285-2/Upstream/1566786; hsa-mir-10b/Downstream/126519;
Nearest TSS
ENST00000437798/Upstream/432143; ENST00000488365/Downstream/119377;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/733711, chr2-CpG: 22/Downstream/9188
Upstream sequence
GGCGACTCGGGGACCCTGCTCCCTCTTagctaaaaatgacgtcggcgttcagctcctccaacctcacgtggacaggcgagggaaccgagacccagagagg
Downstream sequence
TAGCCACTACCATCAAAAAAACATCTACAggctgggtgtggtggctcacacctgtaatcccagcactttgggaggacagcacaggagaatcacttgagcc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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