Basic Information
VIS ID
TVIS20003475
Fusion event
HPV-LINC01060 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1;EU918767.1
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
189409943/188488789 (Hg38)
End
189409943/188488789 (Hg38)
Location type
Intronic
Target gene
LINC01060
Nearest miRNA
hsa-mir-12113/Upstream/3550349;
Nearest TSS
ENST00000502981/Upstream/3010; ENST00000505178/Downstream/268890;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/205469, chr4-CpG: 31/Downstream/142442
Upstream sequence
tctacactatgaaaacagtcagaaattccactgaagatagatttaaaaggatgttcgtaaacaacaaaaggtaaacaactaaaatgttcaacaataggtg
Downstream sequence
tatttggttttctgtttctgcattcatttgcttagatcgccccagctccatctatgttgctgcaaagaatgtgattttattcttttttatggcgtatagt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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