Basic Information
VIS ID
TVIS20003485
Fusion event
HPV-CPNE4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537688.1;HQ537777.1
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
131594546/131875702 (Hg38)
End
131594546/131875702 (Hg38)
Location type
Intronic
Target gene
CPNE4
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-122-5p
Nearest miRNA
hsa-let-7g/Upstream/2603459; hsa-mir-1224/Downstream/110153;
Nearest TSS
ENST00000440867/Upstream/152071; ENST00000483689/Downstream/49879;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/348525, chr3-CpG: 25/Downstream/159334
Upstream sequence
TACACCATCCTGCTCCTTTTCAAAATCCTCTGTCCATCCCTACTCTGTTTTCCATGCTTCTCTGGTATTACCCTGTGTTTATATTTCACAGCTCAGTTTT
Downstream sequence
gatagcattaggagatatacctaatgttaaatgacgagtgaatgggtgcagcagcacaccaacatggcacatgtatacatatgtaacaaacctgcatgtt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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