Basic Information
VIS ID
TVIS20003613
Fusion event
HPV-STK24 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Cell line
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr13
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
99187632/98535378 (Hg38)
End
99187632/98535378 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
STK24
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-877-3p ; hsa-mir-186-5p ; hsa-mir-218-5p ; hsa-mir-578 ; hsa-mir-29b-2-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-140-5p
Nearest miRNA
hsa-mir-1297/Upstream/326778; hsa-mir-1267/Downstream/820753;
Nearest TSS
ENST00000623511/Upstream/13380; ENST00000434547/Downstream/40826;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/60288, chr13-CpG: 180/Downstream/40712
Upstream sequence
gaatcacttgaatctgggagacggaggctgcagtgagccaagatcacgccattgcactccagcctgggcaacaagagcgaaactctgtctcaaacaaaca
Downstream sequence
aacaaacaaacaaacaaaaaaaAAatatatatatatatatatatgtgtgtatacacacacacacacacacacacacacacacacacacacgcaATGCATT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate