Basic Information
VIS ID
TVIS20003631
Fusion event
HPV-LINC01830 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Cell line
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
22645646/22422774 (Hg38)
End
22645646/22422774 (Hg38)
Location type
Intronic
Target gene
LINC01830
Nearest miRNA
hsa-mir-3125/Upstream/3074269; hsa-mir-10b/Downstream/2905866;
Nearest TSS
ENST00000437798/Upstream/45180; ENST00000433429/Downstream/108331;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1378685, chr2-CpG: 256/Downstream/962084
Upstream sequence
ATGCTAGAGATTAATGGCATCCCAGATACAATTCTATGGTTGTACTGAATGCTATAACTTTGCATGAAATAGATGTCAATATTTTAGCAAATTCCTCCAT
Downstream sequence
CTATTTGAACAGAtgtggtgatagtattattgttcaaaatatttgctgtacctttcgaggaggacgattacattttctggcttctttaacatcaaccctg
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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