VISDB Viral Integration Site DataBase

VIS ID

TVIS20003766

Fusion event

HPV-TLN1 integration

Validated

Yes

Detection method

PCR and Sanger sequencing

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Perfect

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Start

5436

End

5520

Orient

-

Integrated sequence

CTTTTGGTGGTGCATACAATATTCCTTTAGTATCAGGTCCTGATATACCCATTAATATAACTGACCAAGCTCCTTCATTAATTCC

Chromosome

chr9

Cytoband

p13.3

Reference genome

Start

End

35722042/35722045 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-760 ; hsa-mir-92b-3p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-mir-222-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-let-7b-5p ; hsa-mir-218-5p ; hsa-mir-2681-5p ; hsa-mir-3682-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-4282 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-544b ; hsa-mir-383-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4293 ; hsa-mir-6821-5p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-561-5p ; hsa-mir-6830-5p ; hsa-mir-8080 ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-1229-5p ; hsa-mir-1275 ; hsa-mir-197-5p ; hsa-mir-3115 ; hsa-mir-3132 ; hsa-mir-4271 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4525 ; hsa-mir-4651 ; hsa-mir-4662a-3p ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4731-5p ; hsa-mir-5010-5p ; hsa-mir-5698 ; hsa-mir-608 ; hsa-mir-625-5p ; hsa-mir-637 ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-3p ; hsa-mir-6780b-5p ; hsa-mir-6782-5p ; hsa-mir-6803-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6870-5p ; hsa-mir-7110-5p ; hsa-mir-7111-5p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-101-2/Upstream/11304; hsa-let-7a-1/Downstream/10877;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/31313, chr9-CpG: 89/Downstream/9768

Downstream sequence

TTGCCCTCAGTCACATCTCCCCCCATTCCCTAAGATTCCCATTCTCTTCCTTGC

Junction sequence