VISDB Viral Integration Site DataBase

VIS ID

TVIS20003780

Fusion event

HPV-GJD3 integration

Validated

Yes

Detection method

PCR and Sanger sequencing

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Perfect

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Start

2482

End

2527

Orient

-

Integrated sequence

GGATGGAAATTTAGTTTCTATGGATGTAAAGCATAGACCATTGGTA

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

38512014/40355762 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-510-3p ; hsa-mir-4474-3p ; hsa-mir-4738-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-2681-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-6732-5p ; hsa-mir-6856-5p ; hsa-mir-7153-3p ; hsa-mir-6758-5p ; hsa-mir-7159-5p ; hsa-mir-26b-3p ; hsa-mir-3065-5p ; hsa-mir-654-3p ; hsa-mir-580-5p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-505-3p ; hsa-mir-421 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3182 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-138-2-3p ; hsa-mir-4762-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-4633-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-3065-3p ; hsa-mir-532-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4284 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6852-5p ; hsa-mir-6742-3p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-3613-3p ; hsa-mir-4668-5p ; hsa-mir-629-3p ; hsa-mir-3692-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2355-5p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-4755-3p ; hsa-mir-942-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-1236-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-877-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-6777-3p ; hsa-mir-4639-3p ; hsa-mir-382-3p ; hsa-mir-605-5p ; hsa-mir-24-3p ; hsa-mir-1972 ; hsa-mir-34b-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-383-3p ; hsa-mir-4690-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-498 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-4279 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-4714-3p ; hsa-mir-5571-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-5009-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4632-3p

Nearest miRNA

hsa-mir-1180/Upstream/162099; hsa-mir-10226/Downstream/1161402;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/10175, chr17-CpG: 150/Downstream/6951

Upstream sequence

GCTGGTGGCATGGGGCAAGTGGTCCCGAACTCCGGCTCCAGGGCCAGACTGCCGGCCTGGGCTAGACGCCAAGCCCTT

Junction sequence