Fusion event
HPV-chr9:q31.2 integration
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reference genome
Not given
End
111237193/108474913 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/1873891; hsa-mir-12126/Downstream/571316;
Upstream sequence
GTGAAAGAAAGTGAGGCGAGTGAGCATGATATTTAATATAAACACAAAGATATTCTGAGAAGAGCTGCTCACTGCCCCCTCCCCCAATACATGTTGATAG
Downstream sequence
acaGCAtctgcatcagtaggttaaagtctgatgctctgcatttccaacaagctcccaagggattctgatgttgctggtcgaccattacacttGGTGGCTA
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.