Fusion event
HPV-BIRC3 integration
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reference genome
Not given
End
102206815/102336084 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10392/Upstream/816179; hsa-let-7a-2/Downstream/1513822;
Nearest cancer related gene
Upstream sequence
GGAGTCTTGCTCGTGCTGGTTTCTATTACACTGGTGTGAATGACAAGGTCAAATGCTTCTGTTGTGGCCTGATGCTGGATAACTGGAAAAGAGGAGACAG
Downstream sequence
TCCTACTGAAAAGCATAAAAAGTTGTATCCTAGCTGCAGATTCGTTCAGAGTCTAAATTCCGTTAACAACTTGGAAGCTACCTCTCAGCCTACTTTTCCT
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.