Basic Information
VIS ID
TVIS20003875
Fusion event
HPV-DHRS4-AS1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
28928286
Virus Sequence
Virus name
HPV
Subtype
HPV35
Reference genome
Not given
Gene
E7
Start
840
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24410009/23940800 (Hg38)
End
24410009/23940800 (Hg38)
Location type
Exon3
Target gene
DHRS4-AS1
Nearest miRNA
hsa-mir-208a/Upstream/522737; hsa-mir-1185-1/Downstream/202689;
Nearest TSS
ENST00000550708/Upstream/6232; ENST00000543741/Downstream/12569;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/363082, chr14-CpG: 32/Downstream/12761
Upstream sequence
cttgcatgaagatgaaaACACCAAATGAACCTCAGTTAGGCACATAGAATATACGCCAAAAAAATGGACTAATAGTAGAAATAACTGCTCTAGAACTCAC
Downstream sequence
AACAACTCTTTATCTGCTACGGGCAGACAGATCTTCATGAAAACACACATGAACCTCCAGAACTCGATGTGCTCCACCAGCCGGCCTTAGCTTGTCAAAG
Reference
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.
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