hsa-mir-582-5p _HNSC.png
hsa-mir-338-5p _HNSC.png
ETS2 _HNSC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20003911
Fusion event
HPV-ETS2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E7
Start
5636
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
End
40184925/38813001 (Hg38)
Location type
Exon3
Target gene
Nearest miRNA
hsa-let-7c/Upstream/3092193; hsa-mir-3197/Downstream/634009;
Nearest cancer related gene
ETS2(OG, No orient, 0)
Upstream sequence
TCAGGGACTATTGGTAGGATTGCCCACAGACCACTTTTACAACAGGTAATTCAATCAGTTTAAATATTGTATTTCCATTTTTTTTCCATCTGTTTTTGCA
Downstream sequence
GCGCCAGCCAGCCTTTGACACCTTTGATGGGTCCCTGTTTGCTGTTTTTCCTTCTCTAAATGAAGAGCAAACACTGCAAGAAGTGCCAACAGGCTTGGAT
Reference
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.
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