Basic Information
VIS ID
TVIS20003979
Fusion event
HPV-LINC00320 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E7
Start
740
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
End
22171481/20799163 (Hg38)
Location type
Intron1
Target gene
Nearest miRNA
hsa-let-7c/Upstream/2112999; hsa-mir-155/Downstream/2280121;
Upstream sequence
CTTTACCATGCTCAGCTTAAGTTAAACATGTTTAATCTCTTAATCTATGTCAAGTGGTAGAACTGATAACCCCAAGAGATTAACCGTCATCTCCACTTTT
Downstream sequence
CCAGCTCCTGGAATACTATATATCCTGAATCACCTAAGACAGGGGTCCCAAATCCCTAGGCCATggaccacacagcaggaggtgagctgcgagtattact
Reference
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.
Curate