Basic Information
VIS ID
TVIS20004083
Fusion event
HPV-chr18:q21.33 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Head and neck squamous cell carcinoma (HNSCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E4
Start
807
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
End
61321414/63654180 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/5203022; hsa-mir-5011/Downstream/3427404;
Nearby gene
SERPINB3(+1016) ;
Upstream sequence
aaaatggtaagtaaaaattgtatttattaatggtatgtaacataatgttttgatatatgtacacgttgttgaatggctaaattaagctaattagcatatc
Downstream sequence
TAGTCTGTCAATTCCCTCGACAACTTGACCAAGTCTCACAGTTAAGTGGTGAAACATTTGTTTCCTCTGCCTTCATCCTGGACTGCTGAATCTTGCTGAA
Reference
Koneva, L. A., et al. HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers. Mol Cancer Res ,2018,16(1): 90-102.
Curate