Basic Information
VIS ID
TVIS20004152
Fusion event
HPV-chr2 integration
Validated
Yes
Detection method
APOT and sequencing
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Good
Reported year
2018
PubMed ID
29364907
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
AF125673.1
Strand
-
Gene
E2/E4
Start
3151
End
3678
Orient
-
Integrated sequence
AACTGGACACATATATATATTTGTGAAGAAGCATCAGTAACTGTGGTAGAGGGTCAAGTTGACTATTATGGTTTATATTATGTTCATGAAGGAATACGAACATATTTTGTGCAGTTTAAAGATGATGCAGAAAAATATAGTAAAAATAAAGTATGGGAAGTTCATGCGGGTGGTCAGGTAATATTATGTCCTACATCTGTGTTTAGCAGCAACGAAGTATCCTCTCCTGAAATTATTAGGCAGCACTTGGCCAAC
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
28595716/28372849 (Hg38)
End
28596131/28373264 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/376400; hsa-mir-10b/Downstream/4158889;
Nearest TSS
ENST00000437798/Upstream/62390; ENST00000460736/Downstream/19184;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/481952, chr2-CpG: 302/Downstream/16833
Nearby gene
FLJ31356(-11144) ; FOSL2(+19647) ;
Upstream sequence
GTATGCAATGTAGGCGAGTTGTAAATCTTGGGTTGTAAAACTAAGCACATGTCAAACTTGtgtattaattgaagtaagctaattggtataataaccaatc
Downstream sequence
cctaatttggaggatttaatgatagtaacaaggagaagatgttgtgttggggaaatataaactggagtacttaggggtaatgaggcatcgagtctataaa
Target sequence
aaatctttcaggcaccaacctgacctggtgtcaaggttaacatcactaatggtgggacaggtcagaatcataagcccaatgtgtaatgccccgaggagaacatggcatctcttctgtggcatccttgccaagaatgcccagccccagagtggcaactgacagactcatttggggggccatattctaccaaataaatggcccaaacttttgaagactgtcaaggtcacaaaagacaaggagagattgaagatctgt
Reference
Warburton, A., et al. HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression. PLoS Genet ,2018,14(1): e1007179.
Curate