Fusion event
HPV-LINC00486 integration
Detection method
APOT and sequencing
Disease
Cervical carcinoma (CC)
Integrated sequence
GAGTTTCCATTTGACGAAAACGGAAATCCAGTGTATGAGCTTAATGATAAGAACTGGAAATCCTTTTTCTCAAGGACGTGGTCCAGATTAAGTTTGCACGAGGACGAGGACAAGGAAAACGATGGAGACTCTTTGCCAACGTTTAAATGTGTGTCAGGACAAAATACTAACACATTATGA
End
33141606/32916539 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/280899; hsa-mir-10b/Downstream/501977;
Upstream sequence
aacctgtcactactaaaactataaaaattagccaggcgtggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacc
Downstream sequence
gggggggggggggggggagggggggggggggggggggggggcgggggcggggggggggagggggggggggggggggggggggggggNNNNNNNNNNNNNN
Target sequence
ggggggggggtggggggggggcgggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggagggaggggggggtgagagggggggggggggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggagggggggggggg
Warburton, A., et al. HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression. PLoS Genet ,2018,14(1): e1007179.