Fusion event
HPV-LINC00486 integration
Detection method
APOT and sequencing
Disease
Cervical carcinoma (CC)
Integrated sequence
CAAAGACAAACAGTATTACAACATAGTTTTAATGATTGTACATTTGAATTATCACAGATGGTACAATGGGCCTACGATAATGACATAGTAGACGATAGTGAAATTGCATATAAATATGCACAATTGGCAGACACTAATAGTAATGCAAGTGCCTTTCTAAAAAGTAATTCACAGGCAAAAATTGTAAAGGATTGTGCAACAATGTGTAGACATTATAAACGAGCAGAAAAAAAACAAATGAGTATGAGTCAATGG
End
33141624/32916557 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/280887; hsa-mir-10b/Downstream/501959;
Upstream sequence
TAAAGAGATCACTTAATTTGACCATAGGGAATTCTGTTCCACTTGGTTAGCTCAGACACGGTTCTCTGTCCTAACCAATTTCATTCTGAACAGGGAAGAC
Downstream sequence
gggggggggggggggggggggggcgggggcggggggggggagggggggggggggggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
gggcgtgggtagggggggggggtggggggggggcgggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggagggaggggggggtgagagggggggggggggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggggggggggaggggggggggggggggggggggggggggggga
Warburton, A., et al. HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression. PLoS Genet ,2018,14(1): e1007179.