Fusion event
HPV-LINC00486 integration
Detection method
APOT and sequencing
Disease
Cervical carcinoma (CC)
Integrated sequence
CGAAATCGGTTGAACCGAAACCGGTTAGTATAAAAGCAGACATTTTATGCACCAAAAGAGAACTGCAATGTTTCAGGACCCACAGGAGCGACCCAGAAAGTTACCACAGTTATGCACAGAGCTGCAAACAACTATACATGATATAATATTAGAATGTGTGTACTGCAAGCAACAGTTACTGCGACGTGAGGTATATGACTTTGCTTTTCGGGATTTATGTATAGTATATAGAGATGGGAATCCATATGCTGTATG
End
33141662/32916595 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/280901; hsa-mir-10b/Downstream/501921;
Upstream sequence
gggagaaaggaaaactcttacagtagaatgccagctgataaatgtagagtgagtgacagaaatagtcactgtttggcaaccatcataatggtgattgatt
Downstream sequence
ggagggggggggggggggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ggggggggtggggggggggcgggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggagggaggggggggtgagagggggggggggggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggaggggggggggggag
Warburton, A., et al. HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression. PLoS Genet ,2018,14(1): e1007179.