Fusion event
HPV-LINC00486 integration
Detection method
APOT and sequencing
Disease
Cervical carcinoma (CC)
Integrated sequence
ATGACTTTGCTTTTCGGGATTTATGTATAGTATATAGAGATGGGAATCCATATGCTGTATGTGATAAATGTTTAAAGTTTTATTCTAAAATTAGTGAGTATAGACATTATTGTTATAGTGTGTATGGAACAACATTAGAACAGCAATACAACAAACCGTTGTGTGATTTGTTAATTAGGTGTATTAACTGTCAAAAGCCACTGTGTCCTGAAGAAAAGCAAAGACATCTGGACAAAAAGCAAAGATTCCATAATA
End
33141670/32916603 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/281032; hsa-mir-10b/Downstream/501913;
Upstream sequence
ccctcccttccttccttccttctttccttcctccctccctccctcccccttacctccctgccttccttccGGCGGGCGTACTTGCGGGCGGGCGGGGCTG
Downstream sequence
ggggggggggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
gggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggaggggggggggggaggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggcgggggcggggggggggaggggg
Warburton, A., et al. HPV integration hijacks and multimerizes a cellular enhancer to generate a viral-cellular super-enhancer that drives high viral oncogene expression. PLoS Genet ,2018,14(1): e1007179.