Basic Information
VIS ID
TVIS20004199
Fusion event
HPV-chr20:p11.1 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E6
Start
273
Host Sequence
Chromosome
chr20
Cytoband
p11.1
Reference genome
GRCh37.p10
Start
26276796/26276796 (Hg38)
End
26276796/26276796 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/68518; hsa-mir-1-1/Downstream/5330390;
Nearest TSS
ENST00000382410/Upstream/88358; ENST00000400552/Downstream/4011683;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/67084, chr20-CpG: 81/Downstream/2325563
Upstream sequence
cgccttaagacccatggtatcgatctgtgctgcagcgaggccctgcctgccacatcaggtgtggtgagcccatcctatctcacttggaaggggccaaaat
Downstream sequence
cggatctgaaggggagtcccgagaacccagcaggcgtcctgaagctctccctcccttggtgggagtcggctcaaggaggtcctgaggacaggactcctgt
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate