Basic Information
VIS ID
TVIS20004201
Fusion event
HPV-chr19:q13.42 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E7
Start
582
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
End
55310208/55310208 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7e/Upstream/64958; hsa-mir-10394/Downstream/77973;
Nearest cancer related gene
BRSK1(TSG, No orient, 0)
Upstream sequence
CCCgtgtttgttttctatggccgccgtcaacaaatgacacagccttggtggctgaaacaacacaagtgattttcgtacagtcctggaggtcagaagtccc
Downstream sequence
acatggtctctgcaggctaacagggtgcctggagggctgcacctggaggctctctggcagagactgtttccttgtgtgttccagttcctaggcgctctgg
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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