Basic Information
VIS ID
TVIS20004202
Fusion event
HPV-chrX:q27.3 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
975
Host Sequence
Chromosome
chrX
Cytoband
q27.3
Reference genome
GRCh37.p10
Start
145696778/145696778 (Hg38)
End
145696778/145696778 (Hg38)
Fragile sites / regions
FRAXA
Nearest miRNA
hsa-let-7f-2/Upstream/4770547; hsa-mir-105-1/Downstream/295972;
Nearest TSS
ENST00000429181/Upstream/449950; ENST00000370490/Downstream/121054;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/64978, chrX-CpG: 98/Downstream/121067
Upstream sequence
CTGTTGTCTTTCCTCAATATTGACTTCTACTTTAATATTTGCCTGGTACAACAAAAGAAGCCCAAATATCCAGTTAGGATGCAGATGAAATGATATATGG
Downstream sequence
AGCTCAATTTGGAAGAAAAGAACCAGTGAGGAAACAATCTTTAATGTTTGCAATAAAAGCAAACCGAGTTCAGAAATAAAAAGGAAATATAGGACAGCTT
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate