Basic Information
VIS ID
TVIS20004203
Fusion event
HPV-chr2:p23.3 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
1398
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37.p10
Start
27135968/27135968 (Hg38)
End
27135968/27135968 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/1807247; hsa-mir-10b/Downstream/860399;
Nearest TSS
ENST00000437798/Upstream/1293; ENST00000407815/Downstream/3435;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1149, chr2-CpG: 19/Downstream/14177
Nearby gene
PREB(-1293) ; PRR30(+879) ;
Upstream sequence
GATGAGGACCTTTGTGCACTCCTGAGAGCGAGCACAAGGGATGTCCTTCCCTGCAAAGAGACGCCCTCTCCTGCATTCTCATTAACCTAAGGTGCACCCA
Downstream sequence
GAGGAATAGCGCAGTGGCTTCATCTTTGGGGATGCCAATATCTGTCCCACAGAGTTGAATTAGATGTGTGAAGGGCCTGGCCAAGCTCTCTGCATATCTC
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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