Basic Information
VIS ID
TVIS20004204
Fusion event
HPV-chr10:p14 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
1793
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37.p10
Start
11700197/11700197 (Hg38)
End
11700197/11700197 (Hg38)
Nearest miRNA
hsa-mir-3155a/Upstream/5547920; hsa-mir-107/Downstream/430563;
Nearest TSS
ENST00000439456/Upstream/20522; ENST00000420401/Downstream/42169;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/88234, chr10-CpG: 93/Downstream/41818
Upstream sequence
tgagactgtgtctcaaaaaaaaaaaaacaaaaaaaaaagcaaaaGGCtgttatggattgaactatgtctccccaaaattcatacgttagagtcctaaacc
Downstream sequence
ccagtacatcagaatgtggctgtatttggagccagggccttcacagaggggagaaagttaaaatggggcagttagggtgggccctaatccagtctgactg
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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