Basic Information
VIS ID
TVIS20004206
Fusion event
HPV-ALG1L5P integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2
Start
3239
Host Sequence
Chromosome
chr7
Cytoband
p22.1
Reference genome
GRCh37.p10
Start
6925283/6925283 (Hg38)
End
6925283/6925283 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
ALG1L5P
Nearest miRNA
hsa-mir-339/Upstream/1213373; hsa-mir-10399/Downstream/141681;
Nearest TSS
ENST00000635602/Upstream/98513; ENST00000467716/Downstream/231651;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/69369, chr7-CpG: 16/Downstream/9843
Upstream sequence
CAGGCCCTCAGGCTGAAATGCCTCCTCCAGGAGAGTATCTCACAGAGGCTGGTGGCCTCCCCACAAGAGCAGTGCTCTTTCTCCAACTGACCAGGTGACT
Downstream sequence
CTGGCTATTGTTTATTTAAAACTTTTTTTCTGAATgggcatggtggctcacacctgtaatcctagaactctgggaggctgaggcaggcagatcacctgag
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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