Basic Information
VIS ID
TVIS20004208
Fusion event
HPV-chr6:p21.1 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2
Start
3729
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37.p10
Start
45691388/45691388 (Hg38)
End
45691388/45691388 (Hg38)
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-10398/Upstream/493618; hsa-mir-10524/Downstream/6452961;
Nearest TSS
ENST00000381078/Upstream/114618; ENST00000321037/Downstream/246076;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/27311, chr6-CpG: 72/Downstream/323752
Upstream sequence
atttatataaaaaacatttattgaatacctgttcagtgctatgtactgtgattagagttgaaaataggcgaaccatgaaacacagcactcccggatctta
Downstream sequence
caatctgaggggaagaaaaggaattgcatataaacaaggcaaagtggtggccttaagggccaggatgaatgattgaggACATAGTGTGCACTCAGTGTTA
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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