Basic Information
VIS ID
TVIS20004209
Fusion event
HPV-chr11:p15.4 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L2
Start
4654
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
End
6741077/6741077 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/2884936; hsa-let-7a-2/Downstream/493689;
Nearby gene
GVINP2(+7048) ;
Upstream sequence
TGTTTGCatgaacacacctgaagactctattgctatgctagaatgttcaactgagggttgtttcagaatttaacctcaaaggataaagaaatggaaaaag
Downstream sequence
ggtgagctctaaagagacatggaacatagatccaaaagtgctgccaatgctgactgactaacataattttgagaaggagagattagaaagaatagaggag
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate