Basic Information
VIS ID
TVIS20004212
Fusion event
HPV-chr5:p11 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L1
Start
5698
Host Sequence
Chromosome
chr5
Cytoband
p11
Reference genome
GRCh37.p10
Start
46292081/46292081 (Hg38)
End
46292081/46292081 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/7734520; hsa-mir-103a-1/Downstream/7659423;
Nearest TSS
ENST00000502646/Upstream/401865; ENST00000513414/Downstream/4119917;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/595673, chr5-CpG: 79/Downstream/4148692
Upstream sequence
ttatttcctttttcaccatgggcctccatggctcccacgtatccctttgcagcctctacaaaaacagtgtttccaaactgctcaatcaaaagcaacgttt
Downstream sequence
aactctctcagaagactgcacacatcacaaagcagtttctcagaaacgttctttccagtttttatctgaagttatttcctttttcaccataggccatgtg
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate