BRSK1 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004214
Fusion event
HPV-BRSK1 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L1
Start
6572
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37.p10
Start
55307445/55307445 (Hg38)
End
55307445/55307445 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
BRSK1
miRNAs that regulate target gene
hsa-mir-339-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-1538 ; hsa-mir-4745-3p ; hsa-mir-765 ; hsa-mir-6077 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-1247-3p ; hsa-mir-6753-5p ; hsa-mir-4779 ; hsa-mir-129-5p ; hsa-mir-4632-3p
Nearest miRNA
hsa-let-7e/Upstream/62195; hsa-mir-10394/Downstream/80736;
Nearest TSS
ENST00000633603/Upstream/3397; ENST00000498738/Downstream/5050;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2536, chr19-CpG: 27/Downstream/5502
Nearest cancer related gene
BRSK1(TSG, No orient, 0)
Upstream sequence
tcaagaccagcctggccaacatggtgaaacctgtctctactaaaaataccaaaataagcctcgcgtggtggtgggctcctgtaatcccagctactcagga
Downstream sequence
ggctgaggcaggagaatcgcttgaactcaggaggcagaggttgcagtgagccaagattgtgccactgcactccagcctgagcgacagagcgagactctgt
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate