Basic Information
VIS ID
TVIS20004215
Fusion event
HPV-chr20:p11.1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Perfect
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L1
Start
7123
End
7221
Host Sequence
Chromosome
chr20
Cytoband
p11.1
Reference genome
GRCh37.p10
Start
26357830/26357830 (Hg38)
End
26357922/26357922 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/149552; hsa-mir-1-1/Downstream/5249264;
Nearest TSS
ENST00000382410/Upstream/169392; ENST00000400552/Downstream/3930557;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/148118, chr20-CpG: 81/Downstream/2244437
Upstream sequence
TTCCCTTTCAGAGAGCACGTTTAAAACACCCTTTTTGTAGTATCTGGAAGTGCACATTTGGAGGGCTTTGATGCATATGGTGAAAAAGGAAATGACTCATATGA
Target sequence
tccctttcagagagcacgtttaaaacaccctttttgtagtatctggaagtgcacatttggagcgctttgatgcatatggtgaaaaaggaaat
Junction sequence
TTCCCTTTCAGAGAGCACGTTTAAAACACCCTTTTTGTAGTATCTGGAAGTGCACATTTGGAGGGCTTTGATGCATATGGTGAAAAAGGAAATGACTCATATGATACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTGAATTAGTGTTGTTTGTTGTTTATATGTTTGTATGTGCTTGTATGTGCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate