Basic Information
VIS ID
TVIS20004216
Fusion event
HPV-chr11:p15.4 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Region type
URR
Start
7733
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37.p10
Start
6740842/6740842 (Hg38)
End
6740842/6740842 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/2884701; hsa-let-7a-2/Downstream/493924;
Nearest TSS
ENST00000527297/Upstream/57441; ENST00000307401/Downstream/28213;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/57130, chr11-CpG: 58/Downstream/185447
Nearby gene
GVINP2(+7283) ;
Upstream sequence
acaccatggcactctagcctgggcgacagagtgagactctgtctccaaaaaaaaaaaaagaaaagaaaagaaaagaaaaaaagaaaaaaCACTATCCTAA
Downstream sequence
GGAGACACTTTCAGTGGAGAAAATGTGGGAGTGTAAAATATTAATTTTGCCATTTTGGATGGTCTGGATATAGAAACAACTCATTTGAGAGTTTTTGCAT
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate