Basic Information
VIS ID
TVIS20004217
Fusion event
HPV-PRR30 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Region type
URR
Start
7733
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37.p10
Start
27137265/27137265 (Hg38)
End
27137265/27137265 (Hg38)
Location type
Intronic
Target gene
PRR30
Nearest miRNA
hsa-mir-1301/Upstream/1808544; hsa-mir-10b/Downstream/859102;
Nearest TSS
ENST00000437798/Upstream/2590; ENST00000407815/Downstream/2138;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2446, chr2-CpG: 19/Downstream/12880
Upstream sequence
GGAGGTAGTGACCTGTTTTGGTGCCCGAGGTGGAGGCCCGGAGAAACATCGTGGGGAGTTTGGTGATTGAAGGCCTGCAGACCTGAAGCTCCTGGTCTGG
Downstream sequence
GAGGGTGTGCCTGGGACTGGGTCGGCCCGGGCCTGAGCTGCTGGAGGCTGAGATGCTGGCAATTGATGCCCACAGGCCTGAGTAGCCTTGCCCTGAGGCC
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
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