Basic Information
VIS ID
TVIS20004218
Fusion event
HPV-chr13:q22.1 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2
Start
3133
Host Sequence
Chromosome
chr13
Cytoband
q22.1
Reference genome
GRCh37.p10
Start
73513425/73513425 (Hg38)
End
73513425/73513425 (Hg38)
Fragile sites / regions
FRA13E
Nearest miRNA
hsa-mir-1297/Upstream/7295101; hsa-mir-1267/Downstream/4184587;
Nearest TSS
ENST00000623511/Upstream/438410; ENST00000430033/Downstream/33416;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/453193, chr13-CpG: 31/Downstream/620547
Upstream sequence
ACAGAAGCAGGTTCCTAACAGTCATCTTTAGACATTGTGACAATGCCCAATAGGCTCCAGTCTTATCTGTCCAGGGTTAATCAGCTAAGCTGAGCAGCAT
Downstream sequence
CCCTTTCTTGGCAATTTTGAGGGTGGCCCAAGAAAGTTCAACTTCGGTCTGTGCTGGTGAAAGAAAATATAAACACTGAGGCCATATTTTCTGCCACATA
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate