Basic Information
VIS ID
TVIS20004220
Fusion event
HPV-chr8:q24.21 integration
Validated
No
Detection method
TaME-seq
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30679491
Virus Sequence
Virus name
HPV
Subtype
HPV18
Reference genome
Not given
Gene
E1
Start
2066
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37.p10
Start
127229053/127229053 (Hg38)
End
127229053/127229053 (Hg38)
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/2406995; hsa-mir-10400/Downstream/566909;
Nearest TSS
ENST00000518652/Upstream/149179; ENST00000642795/Downstream/15584;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/670528, chr8-CpG: 29/Downstream/86589
Nearby gene
CCAT1(-9785) ;
Upstream sequence
TGATAAGAATCTGGCATGGAGAACAGTCAAGGAAGCATTGCAGCTCAATAcaaaacggtggccagggaagatccactgaattaggagtcagcagtcatta
Downstream sequence
ttctactacctgctaatcttctatgagcttcgtcaagtcatttaagcttggtacccgtcagtttcctcatctgaaaactgagaaaagttgtttcaaattg
Reference
Lagstrom, S., et al. TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration. Sci Rep ,2019,9(1): 524.
Curate