VISDB Viral Integration Site DataBase

VIS ID

TVIS20004291

Fusion event

HPV-IQGAP1 integration

Validated

Yes

Detection method

WGS, RNA-seq, Whole-Exome sequencing, PCR

Data source

Curated

Sample type

Disease

Head and neck squamous cell carcinoma (HNSCC)

Quality evaluation

Perfect

Reported year

2014

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Gene

LCR

Start

62

Integrated sequence

ACTACAATAATTCATGTATAAAACTAAGGGCGTAACCGAAATCGGTTGAACCGAAACCGGTT| |AGTATAAAAGCAGACATTGTATGCACCAAAAGAGAACTGCAATGTTTCAGGACCCACAGGAGCGACCCAGAAAGTTACCACAGTTATGCACAGAGCTGCA

Chromosome

chr15

Cytoband

q26.1

Reference genome

Start

End

91045204/90501972 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-324-3p ; hsa-mir-92a-3p ; hsa-mir-376a-3p ; hsa-mir-544a ; hsa-mir-136-3p ; hsa-mir-3074-3p ; hsa-mir-449b-3p ; hsa-mir-506-3p ; hsa-mir-506-5p

Nearest miRNA

hsa-mir-10393/Upstream/495131; hsa-mir-1302-10/Downstream/2402427;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/113185, chr15-CpG: 166/Downstream/27485

Junction sequence