Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004340
Fusion event
HPV-MAP1LC3B integration
Validated
No
Detection method
APOT and sequencing
Data source
download(HPVbase)
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Weak
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
Not given
Start
End
(Hg38)
Location type
Intron3
Target gene
miRNAs that regulate target gene
hsa-mir-204-5p ; hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-6730-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-7150 ; hsa-mir-3926 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-212-5p ; hsa-mir-3918 ; hsa-mir-4761-5p ; hsa-mir-4512 ; hsa-mir-5010-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-4653-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-488-5p ; hsa-mir-6514-5p ; hsa-mir-2113 ; hsa-mir-5195-3p ; hsa-mir-3658 ; hsa-mir-145-5p ; hsa-mir-3653-3p ; hsa-mir-4524a-3p ; hsa-mir-455-3p ; hsa-mir-4495 ; hsa-mir-6507-5p ; hsa-mir-548c-3p ; hsa-mir-494-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
Reference
Lu, X., et al.Multiple-integrations of HPV16 genome and altered transcription of viral oncogenes and cellular genes are associated with the development of cervical cancer. PLoS One,2014, 9(7): e97588.