VISDB Viral Integration Site DataBase

VIS ID

TVIS20004431

Fusion event

HPV-TUBD1 integration

Validated

Yes

Detection method

APOT-PCR

Data source

Curated

Sample type

Disease

Oropharyngeal squamous cell carcinoma (OSCC)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr17

Cytoband

q23.1

Reference genome

Start

End

57947254/59869893 (Hg38)

Orient

+

Location type

Exon3

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1276 ; hsa-mir-376a-2-5p ; hsa-mir-7150 ; hsa-mir-4451 ; hsa-mir-4650-3p ; hsa-mir-5681a ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-96-5p ; hsa-mir-182-5p ; hsa-mir-1271-5p ; hsa-mir-2054 ; hsa-mir-190a-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-598-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6720-3p ; hsa-mir-6778-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4438 ; hsa-mir-620 ; hsa-mir-4531 ; hsa-mir-1270 ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-6879-3p ; hsa-mir-139-3p ; hsa-mir-4524a-3p ; hsa-mir-550b-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4634 ; hsa-mir-504-3p ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p

Nearest miRNA

hsa-mir-10226/Upstream/28556; hsa-mir-1250/Downstream/173132;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/162146, chr17-CpG: 73/Downstream/22788

Upstream sequence

TTTCTACTTATCTCCAAACCTCTGGCACTATAATCTAAAATCCGTAAGATATTACAAATAAATGTTGAGAAAATCTACTCTCATAGTATAAAAGCCTAAC

Downstream sequence

TCCTGCTTAATCACTAAAAGGATAAGCACAAACAAGAAAAAAAGGAACAGGAGAGAATATAACAGCAACAAAATTTTGGAGCTGGAGAGCAAATGGTTAC

Target sequence

TTAATTTGTGGTATAATATATGCTATTAATACCTAGTAGTGATTTCTAGTTACACATGACAGACTGAGCATATCAGTTTCCTGCCACTCTCTCTCCAGA