VISDB Viral Integration Site DataBase

VIS ID

TVIS20004438

Fusion event

HPV-SLC7A1 integration

Validated

Yes

Detection method

APOT-PCR

Data source

Curated

Sample type

Disease

Oropharyngeal squamous cell carcinoma (OSCC)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr13

Cytoband

q12

Reference genome

Start

End

30135781/29561644 (Hg38)

Orient

+

Location type

Exon1

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-122-5p ; hsa-mir-125b-5p ; hsa-mir-652-3p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-24-3p ; hsa-mir-671-5p ; hsa-mir-328-3p ; hsa-mir-92a-3p ; hsa-mir-1260b ; hsa-mir-3688-3p ; hsa-mir-3978 ; hsa-mir-4694-3p ; hsa-mir-4802-3p ; hsa-mir-551b-5p ; hsa-mir-3677-5p ; hsa-mir-4435 ; hsa-mir-5693 ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1251-3p ; hsa-mir-4784 ; hsa-mir-3194-5p ; hsa-mir-3150b-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-3916 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-5680 ; hsa-mir-651-3p ; hsa-mir-3148 ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-191-5p ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-5589-3p ; hsa-mir-4786-3p ; hsa-mir-4717-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1205 ; hsa-mir-1587 ; hsa-mir-185-3p ; hsa-mir-2467-3p ; hsa-mir-3158-5p ; hsa-mir-3620-5p ; hsa-mir-3665 ; hsa-mir-3678-3p ; hsa-mir-4283 ; hsa-mir-4417 ; hsa-mir-4489 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4537 ; hsa-mir-4656 ; hsa-mir-4675 ; hsa-mir-4731-5p ; hsa-mir-4741 ; hsa-mir-5001-5p ; hsa-mir-541-3p ; hsa-mir-654-5p ; hsa-mir-657 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6804-5p ; hsa-mir-6829-5p ; hsa-mir-762

Nearest miRNA

hsa-mir-2276/Upstream/5399140; hsa-mir-1267/Downstream/10102390;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/47009, chr13-CpG: 147/Downstream/33120

Upstream sequence

TCCTGTGGAACAGCCCAGGCAGCTCCCGAGGGGATATGTCGGGGGTGTCAGAGTGTTGTAAAAAGAGGGGGTTTCTAGTCTGAAAAGGCAAACTACAATT

Downstream sequence

GGAGAGTGATGGAGGACAGAAATCAAAACCTAATGTGCACAATAAAGACCTCAGCGTCCCTGGAACCACAAGGGCAGGCCCCAGGCATCACCGAAGAATC

Target sequence

AGTTTAATTTATCCTTTGACATAAATATTGTCTTGAAATTTCCATGAGTTTTTTGTTAAAAGCATTGGGCTAAGAGACTGAAATAACTTTTCTGTTCAA