SLC47A2 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004589
Fusion event
HPV-SLC47A2 integration
Validated
Yes
Detection method
FISH, WGS, RNA-seq, qPCR
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Perfect
Reported year
2014
PubMed ID
24201445
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Gene
E2
Start
3694
End
3722
Integrated sequence
CAGTGTCGTCTACATGGCATTGGACAGGA
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
19609671/19706330 (Hg38)
End
19609643/19706358 (Hg38)
Location type
Intronic
Target gene
SLC47A2
Nearest miRNA
hsa-mir-1180/Upstream/361756; hsa-mir-10226/Downstream/7587552;
Nearest TSS
ENST00000595228/Upstream/32246; ENST00000577087/Downstream/8520;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/57160, chr17-CpG: 32/Downstream/7412
Upstream sequence
GCAGGTGCCCGTGGGAGGTGGCTGAGGCA
Target sequence
ATTTTTAAAACTATGTTCACTTATTTGattaaaataaaaatttaaaaaaaatCTGGCACTCATTTGAAATGTCTTTTGGTAATGAAACTGTGAAGTGATTAAGAAACCCTCCTAAGATGTCCTGGTGAGTTTCTGCCGGAGTCTCTCTAGCCAGAAAAAGGGACCATTATTTAAACTGGTCCAAGCCAGTTTATATTGAGACTCCAGGACAGACATTTTTTCCAGCTTGTGGGCTGCATATTTTTGGACTACTCT
Junction sequence
GCAGGTGCCCGTGGGAGGTGGCTGAGGCAGTGTCGTCTACATGGCATTGGACAGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Akagi, K., et al.Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res ,2014,24(2): 185-199.
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