hsa-mir-21-5p _CESC.png
TP63 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004598
Fusion event
HPV-TP63 integration
Validated
Yes
Detection method
FISH, WGS, RNA-seq, qPCR
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Perfect
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Gene
E2
Start
3719
End
3745
Integrated sequence
AGGACATAATGTAAAACATAAAAGTGC
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
End
189612849/189895060 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/65027; hsa-mir-3137/Downstream/5239446;
Nearest cancer related gene
TP63(OG, No orient, 0)
Upstream sequence
GAGTGACGATGATGTACAGATTCTT
Target sequence
AGTGACGATGATGTACAGATTCTT
Junction sequence
GAGTGACGATGATGTACAGATTCTTCAGGAGTGACGATGATGTACAGATTCTTCAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Akagi, K., et al.Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res ,2014,24(2): 185-199.
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