hsa-mir-362-3p _CESC.png
HEMGN _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004610
Fusion event
HPV-HEMGN integration
Validated
Yes
Detection method
FISH, WGS, RNA-seq, qPCR
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Perfect
Reported year
2014
PubMed ID
24201445
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Gene
E1
Start
1409
End
1436
Integrated sequence
AGACACACTATATGCCAAACACCACTTA
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100706106/97943802 (Hg38)
End
100706084/97943824 (Hg38)
Location type
Intronic
Target gene
HEMGN
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-1287-3p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485
Nearest miRNA
hsa-let-7a-1/Upstream/580121; hsa-mir-12126/Downstream/285325;
Nearest TSS
ENST00000422679/Upstream/5409; ENST00000473205/Downstream/1032;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/21033, chr9-CpG: 276/Downstream/38876
Downstream sequence
TGATTTATGAGAGAATGAGTGAA
Target sequence
tcactcattctctcataaatca
Junction sequence
AAGACACACTATATGCCAAACACCACTTGATTTATGAGAGAATGAGTGAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Akagi, K., et al.Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res ,2014,24(2): 185-199.
Curate