Basic Information
VIS ID
TVIS20004638
Fusion event
HPV-LINC02008 integration
Validated
Yes
Detection method
FISH, WGS, RNA-seq, qPCR
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Perfect
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Region type
LCR
Start
7591
End
7656
Integrated sequence
CCATTCCATTGTTTTTTACACTGCACTATGTGCAACTACTGAATCACTATGTACATTGTGTCATAT
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
End
82041282/81992131 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/2484150; hsa-mir-12124/Downstream/3393579;
Target sequence
atccacaggcag
Junction sequence
CATCCACAGGCAGTGGATGTTACCATTCCATTGTTTTTTACACTGCACTATGTGCAACTACTGAATCACTATGTACATTGTGTCAtacattgttcatttgtaaaactgcacatgggtgtgtgcaaaccgttttaggttacacatttacaagcaacttatataataatacta
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Akagi, K., et al.Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res ,2014,24(2): 185-199.
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