ANPEP _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004664
Fusion event
HPV-ANPEP integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E4
Start
3355
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
90333738/89790507 (Hg38)
End
90333738/89790507 (Hg38)
Location type
Intronic
Target gene
ANPEP
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-24-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-10393/Upstream/422401; hsa-mir-1302-10/Downstream/60130;
Nearest TSS
ENST00000557528/Upstream/14149; ENST00000559419/Downstream/2680;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/13262, chr15-CpG: 90/Downstream/23663
Upstream sequence
CTCTCTCCACTATCATATCTGGCATAATCTCCTCCATGTCTGACAAGCCAAGGAAAACACTACATCAGGCCAGGAGAGAATCTTCCCCCCGGAGCTCTGC
Downstream sequence
GAGGTTGGAGAAGGAGAACGAGCCACCACCATAACTGCAGGGAGGGAGAGAGGTGAActgtgagggaggccgggaactaaggaggctcatcctcacacct
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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