hsa-mir-3681-5p _CESC.png
IFT140 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004677
Fusion event
HPV-IFT140 integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E6
Start
407
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1612024/1562023 (Hg38)
End
1612024/1562023 (Hg38)
Location type
Intronic
Target gene
IFT140
miRNAs that regulate target gene
hsa-mir-93-3p ; hsa-mir-6874-5p ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-6080 ; hsa-mir-558 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-22-3p
Nearest miRNA
hsa-mir-3176/Upstream/791746; hsa-mir-11401/Downstream/172962;
Nearest TSS
ENST00000527434/Upstream/28450; ENST00000563162/Downstream/2087;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/6679, chr16-CpG: 424/Downstream/48030
Upstream sequence
agagtgagactccatctcaaaaaaacaaacaacaacaacaacaaaaacaaaaattagccaggcatgatggcccacatctgtagttgcagctactcagaag
Downstream sequence
GAGACTGTGGGAGGTGGCAGGCCGGGGGAAGCTCTCATGAAGCAGGAAGCCGTGCTCTTCGGAAATGAAGAAGGACAGGATCAAAACATCTGCCTGGGAG
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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