Basic Information
VIS ID
TVIS20004690
Fusion event
HPV-NBPF22P integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E6
Start
115
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
84616300/85320482 (Hg38)
End
84616300/85320482 (Hg38)
Location type
Intronic
Target gene
NBPF22P
Nearest miRNA
hsa-mir-10397/Upstream/2480258; hsa-mir-103a-1/Downstream/1794397;
Nearest TSS
ENST00000502646/Upstream/106868; ENST00000505572/Downstream/99969;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/935697, chr5-CpG: 34/Downstream/1947058
Upstream sequence
gcacgtaatgccccaaatgcgcaggttcaaacagaaaatcactcctagtaccaagggccaggacgggtcacactaaatgaacaaagatgatcaacagatg
Downstream sequence
ggaccagcaaatgttagtcacatggacacactgaagggtgaggaggatggctttactgtatgaaaagaaagctctcagcaaacgaagaggggtcctggca
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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