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TVIS20004691
Basic Information
VIS ID
TVIS20004691
Fusion event
HPV-NBPF22P integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E7
Start
567
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
84624716/85328898 (Hg38)
End
84624716/85328898 (Hg38)
Location type
Intronic
Target gene
NBPF22P
Nearest miRNA
hsa-mir-10397/Upstream/2488674; hsa-mir-103a-1/Downstream/1785981;
Nearest TSS
ENST00000502646/Upstream/115284;
ENST00000505572/Downstream/91553;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/944113
,
chr5-CpG: 34/Downstream/1938642
Upstream sequence
AGCGAGGCTCCGTGTGTGACTTTGTCCCCTTCCCTGGAGGGCAGGGCCAGCTGTGTCCTCCCCCACCTTGGTGCTCCATCCTCAGCACAGGTCCTCTGCA
Downstream sequence
gagcttctgaattctcatagagttggacctacaggcagaagattaaaggataaggtcatcatatttactcctgtctttgcaagatcaccaggctggcact
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
Sample Information
×
Sample name
H597101A
Sample type
Tumor
Gender
Female
CpG Island Information
×
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